Musings

Cytoscape is described as an open source bioinformatics software platform for visualizing molecular interaction networks. However, because of the generic nature of graph display and Cytoscape’s flexible import/export capabilities it can easily be used in many other contexts that involve the visual presentation of a web of connected nodes.

Which, for example, was easily created from nothing more than the following data.

Infrastructure    Future
Client    Future
Server    Future
Development    Future
Hardware    Infrastructure
Network    Infrastructure
Cloud    Infrastructure
Cluster    Infrastructure
Virtual    Infrastructure
Browser    Client
Data    Server
Code    Server
Methodology    Development
Tools    Development
Documentation    Development
Amazon    Cloud
Google    Cloud
EC2    Amazon
S3    Amazon
SimpleDB    Amazon
BigTable    Google
MapReduce    Cluster
Hadoop    MapReduce
RIA    Browser
REST    RIA
JavaScript    REST
JSON    JavaScript
AJAX    JavaScript
Jquery    JavaScript
XHTML    RIA
CSS    RIA
Files    Data
Metadata    Data
SRB    Files
SAMBA    Files
ZFS    Files
Google    Files
Flickr    Files
Other_Files    Files
LinkedData    Metadata
XML    LinkedData
MODS    XML
METS    XML
RDF_XML    XML
RDF_Model    LinkedData
Ontology    RDF_Model
RDF    Ontology
RDFS    Ontology
OWL    Ontology
DublinCore    Ontology
MODS    Ontology
FOAF    Ontology
DOAP    Ontology
SKOS    Ontology
OperatingSystem    Code
Java    Code
Database    Code
Linux    OperatingSystem
ApplicationServer    Java
Tomcat    ApplicationServer
JBOSS    ApplicationServer
QueryLanguage    Database
SQL    QueryLanguage
SPARQL    QueryLanguage
Solr    QueryLanguage
RelationalDatabase    Database
Triplestore    Database
Solr    Database
Agile    Methodology
Eclipse    Tools
Subversion    Tools
Wiki    Documentation
Blog    Documentation
KB    Documentation